I've never really used epydoc, though I have looked at it. I'm not a fan of three-paned browsing, though I vaguely remember hearing you can generate non-framed pages from it too. In the end, I found Pudge more useful for generating the rest of the sites -- just doing the simple stuff of rendering the reST files, wrapping them in a template, and (with buildutils) uploading them. But now that the source is up there, I suspect I'll be tweaking that part more as well.
Good work anyway, I'm a fan of all your stuff. Although I'm pretty sure I'll never understand what Paste is, no matter how many times you explain it.